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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t80 CTN 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t80 CTN2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.805
3q8h AO92-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.724
3k2x I5A2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.702
3p0z CTN2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.702
4c8g C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.694
3ke1 8292-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.687
4c8e C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.676
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.671
3f0f C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.667
1iv4 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.665
1gx1 CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.659
2uzh CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.656
1iv2 CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.654
3iew CTP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.653
2w6m OA1Biotin carboxylase 6.3.4.14 0.650