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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t54 ATP Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t54 ATPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 1.199
3t9d ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.959
3t9a ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.890
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.877
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.839
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.837
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.772
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.763
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.735
1cdk ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.732
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.718
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.710
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.709
4x6r ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.705
1o6k ANPRAC-beta serine/threonine-protein kinase 2.7.11.1 0.700
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.698
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.698
2p0a ANPSynapsin-3 / 0.697
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.691
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.688
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.687
1a9x ADPCarbamoyl-phosphate synthase large chain / 0.685
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.682
4krc AGSCyclin-dependent protein kinase PHO85 2.7.11.22 0.682
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.681
3rv4 ADPBiotin carboxylase 6.3.4.14 0.678
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
5ce3 ADPProtein kinase YopO / 0.677
2io7 ANPBifunctional glutathionylspermidine synthetase/amidase / 0.675
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.674
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
3eth ATPN5-carboxyaminoimidazole ribonucleotide synthase / 0.671
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.667
2pyw ADPMethylthioribose kinase 2.7.1.100 0.667
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.667
2vuw 5IDSerine/threonine-protein kinase haspin 2.7.11.1 0.666
4aw1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.665
3nyn SGVG protein-coupled receptor kinase 6 2.7.11.16 0.664
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.664
2zdg ADPD-alanine--D-alanine ligase / 0.661
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.660
1q8y ADPSerine/threonine-protein kinase SKY1 2.7.11.1 0.659
2pml ANPUncharacterized protein / 0.658
5c1o ANPD-alanine--D-alanine ligase / 0.657
4ffr ATPUncharacterized protein / 0.656
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.655
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.654
2j0l ANPFocal adhesion kinase 1 2.7.10.2 0.654
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.654
3lmi ATPMyosin heavy chain kinase A 2.7.11.7 0.653
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.653
4ysj ADPCalmodulin-like domain protein kinase / 0.652
4zol ACPTubulin tyrosine ligase / 0.651