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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3s9t E49 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.890
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.852
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.826
3myq E27Carbonic anhydrase 2 4.2.1.1 0.804
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.798
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.783
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.782
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.777
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.773
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.746
3sax E50Carbonic anhydrase 2 4.2.1.1 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.740
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.739
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.734
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.728
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.726
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.726
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.725
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.725
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.721
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.716
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.714
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.713
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.711
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.710
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.708
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.707
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.705
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.705
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.702
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.696
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.695
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.692
3bet CTFCarbonic anhydrase 2 4.2.1.1 0.689
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.688
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.687
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.686
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.682
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.680
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.677
4uov AZMCarbonate dehydratase / 0.677
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.675
2x7t WZBCarbonic anhydrase 2 4.2.1.1 0.673
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.671
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.671
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.668
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.668
4xiw AZMCarbonic anhydrase, alpha type / 0.668
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.665
3mho J43Carbonic anhydrase 2 4.2.1.1 0.663
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.661
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.661
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.660
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.660
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.659
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.658
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.657
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.657
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.656
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.656
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.654
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.653
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.653
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.653
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.650