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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rqq BA3 ADP-dependent (S)-NAD(P)H-hydrate dehydratase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rqq BA3ADP-dependent (S)-NAD(P)H-hydrate dehydratase / 1.001
3rqh B6PADP-dependent (S)-NAD(P)H-hydrate dehydratase / 0.937
3rq6 APRADP-dependent (S)-NAD(P)H-hydrate dehydratase / 0.923
3rq8 AP5ADP-dependent (S)-NAD(P)H-hydrate dehydratase / 0.904
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.669
4tlb AGSCircadian clock protein kinase KaiC 2.7.11.1 0.661
4tle AGSCircadian clock protein kinase KaiC 2.7.11.1 0.661
4oi4 ATPmRNA cleavage and polyadenylation factor CLP1 / 0.659
1cg6 MTAS-methyl-5'-thioadenosine phosphorylase / 0.658
4qfy DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.658
4tld AGSCircadian clock protein kinase KaiC 2.7.11.1 0.658
4tl7 ATPCircadian clock protein kinase KaiC 2.7.11.1 0.654
1sd1 FMCS-methyl-5'-thioadenosine phosphorylase / 0.653
4tlc AGSCircadian clock protein kinase KaiC 2.7.11.1 0.652
4to3 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.650