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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r9o Z71 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.971
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.856
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.838
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.797
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.789
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.780
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.778
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.774
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.773
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.762
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.761
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.750
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.742
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.742
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.739
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.739
3rzb 02ZCyclin-dependent kinase 2 2.7.11.22 0.726
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.720
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.706
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.702
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.684
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.681
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.676
4eok 4SPCyclin-dependent kinase 2 2.7.11.22 0.674
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.670
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.668
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.668
2fvd LIACyclin-dependent kinase 2 2.7.11.22 0.657
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.654
3unj 0BXCyclin-dependent kinase 2 2.7.11.22 0.653