sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3r1k | COA | N-acetyltransferase Eis |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3r1k | COA | N-acetyltransferase Eis | / | 1.323 | |
| 3sxn | COA | N-acetyltransferase Eis | / | 0.992 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.840 | |
| 3ryo | ACO | N-acetyltransferase Eis | / | 0.800 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.794 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.777 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.777 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.774 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.773 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.771 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.762 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.760 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.759 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.753 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.743 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.741 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.740 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.738 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.737 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.736 | |
| 1qsr | ACO | HAT A1 | / | 0.733 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.732 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.731 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.731 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.724 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.721 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.719 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.719 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.716 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.711 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.706 | |
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 | 0.702 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.700 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.698 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.693 | |
| 4r87 | COA | Spermidine N(1)-acetyltransferase | / | 0.692 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.691 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.689 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.689 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.686 | |
| 4kub | COA | Uncharacterized protein | / | 0.685 | |
| 5kf1 | COA | Predicted acetyltransferase | / | 0.685 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.682 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.682 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.678 | |
| 4if5 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.674 | |
| 2ozg | COA | GCN5-related N-acetyltransferase | / | 0.673 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.669 | |
| 2jev | NHQ | Diamine acetyltransferase 1 | / | 0.668 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.665 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.663 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.663 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.663 | |
| 4ag9 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.662 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.662 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.656 | |
| 1pua | COA | HAT A1 | / | 0.655 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.655 | |
| 4kpu | FAD | Electron transfer flavoprotein alpha/beta-subunit | / | 0.655 | |
| 1s7n | COA | Acetyl transferase | / | 0.654 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.654 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.653 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.652 | |
| 5kf2 | COA | Predicted acetyltransferase | / | 0.651 |