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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qlz QLZ Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qlz QLZUncharacterized protein / 1.212
3cse N22Uncharacterized protein / 0.860
3k45 51PDihydrofolate reductase 1.5.1.3 0.724
3eej 53RUncharacterized protein / 0.718
3eem 53VUncharacterized protein / 0.717
3qly 55VUncharacterized protein / 0.717
4ixg IXGDihydrofolate reductase 1.5.1.3 0.716
4h97 53SDihydrofolate reductase 1.5.1.3 0.704
2blb CP7Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.702
3sqy Q11Dihydrofolate reductase 1.5.1.3 0.696
3gyf 51PDihydrofolate reductase 1.5.1.3 0.694
3sgy 06WDihydrofolate reductase 1.5.1.3 0.694
3eek 53SUncharacterized protein / 0.685
3i8a N22Dihydrofolate reductase 1.5.1.3 0.683
2w3v TOPDihydrofolate reductase / 0.682
4g95 OAGDihydrofolate reductase 1.5.1.3 0.675
3nxo D2BDihydrofolate reductase 1.5.1.3 0.668
1j3k WRABifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.666
1j3j CP6Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.663
3d80 Q22Dihydrofolate reductase 1.5.1.3 0.659