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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qdd 94M Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qdd 94MHeat shock protein HSP 90-alpha / 1.010
3o6o 94MHeat shock protein 83 / 0.804
2h55 DZ8Heat shock protein HSP 90-alpha / 0.755
1uyh PU0Heat shock protein HSP 90-alpha / 0.754
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1uyf PU1Heat shock protein HSP 90-alpha / 0.731
3o0i P54Heat shock protein HSP 90-alpha / 0.720
1uy9 PU6Heat shock protein HSP 90-alpha / 0.713
1uyk PUXHeat shock protein HSP 90-alpha / 0.707
1uye PU9Heat shock protein HSP 90-alpha / 0.685
2wi6 ZZ6Heat shock protein HSP 90-alpha / 0.684
2fwy H64Heat shock protein HSP 90-alpha / 0.663
4e5f 0N7Polymerase acidic protein / 0.660
3wha WHAHeat shock protein HSP 90-alpha / 0.654