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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3py0 SU9 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3py0 SU9Cyclin-dependent kinase 2 2.7.11.22 0.852
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.789
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.771
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.770
1ke9 LS5Cyclin-dependent kinase 2 2.7.11.22 0.758
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.751
1fvt 106Cyclin-dependent kinase 2 2.7.11.22 0.745
4e5i 0N9Polymerase acidic protein / 0.744
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.744
3ti1 B49Cyclin-dependent kinase 2 2.7.11.22 0.740
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.739
4fkw 62KCyclin-dependent kinase 2 2.7.11.22 0.730
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.719
1p2a 5BNCyclin-dependent kinase 2 2.7.11.22 0.718
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.711
1uv5 BRWGlycogen synthase kinase-3 beta 2.7.11.26 0.707
3r8p Z46Cyclin-dependent kinase 2 2.7.11.22 0.701
3hzt J60Calmodulin-like domain protein kinase isoform 3 / 0.682
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.681
1gih 1PUCyclin-dependent kinase 2 2.7.11.22 0.677
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.677
1ydr IQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
3l9n L9NcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
1v0o INRCell division control protein 2 homolog 2.7.11.22 0.664
2hy0 306Serine/threonine-protein kinase Chk1 2.7.11.1 0.664
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.664
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.662
2qkr IXMCdc2-like CDK2/CDC28 like protein kinase / 0.662
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.661
1gii 1PUCyclin-dependent kinase 2 2.7.11.22 0.660
2b52 D42Cyclin-dependent kinase 2 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1e9h INRCyclin-dependent kinase 2 2.7.11.22 0.659
3zly YSODual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.655
2y7j B49Phosphorylase b kinase gamma catalytic chain, liver/testis isoform 2.7.11.19 0.650
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.650