Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pm9 FAD Putative oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pm9 FADPutative oxidoreductase / 1.363
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.948
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.917
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.915
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.883
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.881
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.880
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.872
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.853
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.853
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.842
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.840
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.826
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.822
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.792
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.772
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.761
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.748
1wyg FADXanthine dehydrogenase/oxidase / 0.729
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.721
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.717
3w8w FADPutative FAD-dependent oxygenase EncM / 0.683
4ysw FADXanthine dehydrogenase/oxidase / 0.669