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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pkd Y10 Methionine aminopeptidase 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pkd Y10Methionine aminopeptidase 2 / 1.137
3pkb Y16Methionine aminopeptidase 2 / 1.043
3pka Y02Methionine aminopeptidase 2 / 1.026
4flk Y10Methionine aminopeptidase 1 / 1.023
3pkc Y08Methionine aminopeptidase 2 / 1.011
4fll YZ6Methionine aminopeptidase 1 / 0.980
4fli Y16Methionine aminopeptidase 1 / 0.961
3pke Y10Methionine aminopeptidase 2 / 0.932
4flj Y08Methionine aminopeptidase 1 / 0.923
1qzy TDEMethionine aminopeptidase 2 / 0.689
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
3d27 W29Methionine aminopeptidase / 0.658