Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3p0f BAU Uridine phosphorylase 2 2.4.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3p0f BAUUridine phosphorylase 2 2.4.2.3 0.916
3p0e BAUUridine phosphorylase 2 2.4.2.3 0.856
3euf BAUUridine phosphorylase 1 / 0.813
1u1c BAUUridine phosphorylase 2.4.2.3 0.760
1u1f 183Uridine phosphorylase 2.4.2.3 0.695
1u1d 181Uridine phosphorylase 2.4.2.3 0.667