1.900 Å
X-ray
2008-10-10
Name: | Uridine phosphorylase 1 |
---|---|
ID: | UPP1_HUMAN |
AC: | Q16831 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 12 % |
D | 88 % |
B-Factor: | 26.004 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.707 | 1080.000 |
% Hydrophobic | % Polar |
---|---|
38.75 | 61.25 |
According to VolSite |
HET Code: | BAU |
---|---|
Formula: | C14H16N2O4 |
Molecular weight: | 276.288 g/mol |
DrugBank ID: | DB07437 |
Buried Surface Area: | 71.35 % |
Polar Surface area: | 78.87 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
16.083 | 27.6971 | -56.2311 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CZ | CB | TYR- 35 | 4.18 | 0 | Hydrophobic |
OAC | NE2 | HIS- 36 | 2.64 | 172 | H-Bond (Protein Donor) |
CAJ | SD | MET- 110 | 3.63 | 0 | Hydrophobic |
CAK | CE1 | PHE- 213 | 4.37 | 0 | Hydrophobic |
OAB | NE2 | GLN- 217 | 2.93 | 159.68 | H-Bond (Protein Donor) |
NAN | OE1 | GLN- 217 | 2.77 | 154.41 | H-Bond (Ligand Donor) |
OAA | NH1 | ARG- 219 | 3.46 | 139.74 | H-Bond (Protein Donor) |
OAA | NH2 | ARG- 219 | 3.14 | 156.83 | H-Bond (Protein Donor) |
CD2 | CD1 | LEU- 272 | 4.01 | 0 | Hydrophobic |
CE1 | CD1 | LEU- 273 | 4.23 | 0 | Hydrophobic |
CD1 | CD2 | LEU- 273 | 3.54 | 0 | Hydrophobic |
CZ | CD1 | ILE- 281 | 3.77 | 0 | Hydrophobic |