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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3oqf S51 Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3oqf S51Renin 3.4.23.15 1.110
3oqk S52Renin 3.4.23.15 0.879
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3vye VYERenin 3.4.23.15 0.693
3qrs NK8Gag-Pol polyprotein 3.4.23.16 0.682
2g21 L1BRenin 3.4.23.15 0.681
2fdp FRPBeta-secretase 1 3.4.23.46 0.680
3qih NI7Gag-Pol polyprotein 3.4.23.16 0.680
3qpj N4IGag-Pol polyprotein 3.4.23.16 0.677
3qrm NK7Gag-Pol polyprotein 3.4.23.16 0.676
1odw 0E8Gag-Pol polyprotein 3.4.23.16 0.670
4fco 0U4Beta-secretase 1 3.4.23.46 0.661
1odx 0E8Gag-Pol polyprotein 3.4.23.16 0.658
1zsf 0ZSGag-Pol polyprotein 3.4.23.16 0.654