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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ols EST Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ols ESTEstrogen receptor beta / 1.179
4j24 ESTEstrogen receptor beta / 1.066
4j26 ESTEstrogen receptor beta / 1.054
3oll ESTEstrogen receptor beta / 1.052
2qgt EEDEstrogen receptor / 0.939
3l03 4OHEstrogen receptor / 0.933
5dx3 ESTEstrogen receptor / 0.930
2g5o DRQEstrogen receptor / 0.869
2yat EEUEstrogen receptor / 0.847
2p15 EZTEstrogen receptor / 0.818
2j7x ESTEstrogen receptor beta / 0.772
5dxg ESTEstrogen receptor / 0.756
1x7e 244Estrogen receptor / 0.741
2yja ESTEstrogen receptor / 0.732
1x7r GENEstrogen receptor / 0.715
4ofr DHTAndrogen receptor / 0.713
4pxm ESTEstrogen receptor / 0.705
2b1z 17MEstrogen receptor / 0.704
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.697
5hyr ESTEstrogen receptor / 0.687
1fdu ESTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.686
1qkn RALEstrogen receptor beta / 0.686
1a27 ESTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.680
1ogx EQUSteroid Delta-isomerase 5.3.3.1 0.676
4pp6 STLEstrogen receptor / 0.676
1fdt ESTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.675
1lri CLRBeta-elicitin cryptogein / 0.675
2d06 ESTSulfotransferase 1A1 2.8.2.1 0.675
1lhw ESMSex hormone-binding globulin / 0.664
1y5r C0RCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.664
4e5f 0N7Polymerase acidic protein / 0.664
1xu9 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.663
2pog WSTEstrogen receptor / 0.662
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4oez DHTAndrogen receptor / 0.660
2aib ERGBeta-elicitin cinnamomin / 0.657
2piu DHTAndrogen receptor / 0.654
2ylp TESAndrogen receptor / 0.654
4hlw TESAndrogen receptor / 0.653
1rk3 VDXVitamin D3 receptor / 0.651
2piq DHTAndrogen receptor / 0.651