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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ogq AB1 Pol polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ogq AB1Pol polyprotein / 1.221
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3slz 3TLPutative gag-pro-pol polyprotein / 0.706
2rkf AB1Pol protein / 0.699
1ec0 BEDGag-Pol polyprotein 3.4.23.16 0.685
1hih C20Gag-Pol polyprotein / 0.684
2fxd DR7Pol polyprotein / 0.684
3ecg 065Gag-Pol polyprotein 3.4.23.47 0.674
3ucb 017Gag-Pol polyprotein / 0.668
3sm2 478Putative gag-pro-pol polyprotein / 0.667
4heg G52Gag-Pol polyprotein 3.4.23.16 0.666
2f8g 017Gag-Pol polyprotein 3.4.23.16 0.665
2p3a 3TLPol protein / 0.665
4e5f 0N7Polymerase acidic protein / 0.660
2hs1 017Protease / 0.657
3kfn 3TLGag-Pol polyprotein / 0.657
3lzv 017Gag-Pol polyprotein 3.4.23.16 0.657
2qhc AB1Protease / 0.656
3r4b 74TGag-Pol polyprotein / 0.654
4j54 G52Gag-Pol polyprotein 3.4.23.16 0.654
1ebw BEIGag-Pol polyprotein 3.4.23.16 0.653
2pk6 O33V-1 protease / 0.653
4j5j 478Gag-Pol polyprotein 3.4.23.16 0.653
2f80 017Gag-Pol polyprotein 3.4.23.16 0.652
3lzu 017Gag-Pol polyprotein 3.4.23.16 0.652
3el1 DR7Gag-Pol polyprotein 3.4.23.16 0.651
2qci 065Gag-Pol polyprotein 3.4.23.16 0.650
3o9d K19Pol polyprotein / 0.650
4hdf G52Gag-Pol polyprotein 3.4.23.16 0.650