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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3of3 DIH Purine nucleoside phosphorylase DeoD-type 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3of3 DIHPurine nucleoside phosphorylase DeoD-type 1 / 0.808
3occ DIHPurine nucleoside phosphorylase DeoD-type / 0.793
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3phc IM5Purine nucleoside phosphorylase / 0.696
4tti FMCPurine nucleoside phosphorylase DeoD-type / 0.674
4tta FMCPurine nucleoside phosphorylase DeoD-type / 0.670
1k9s FM1Purine nucleoside phosphorylase DeoD-type / 0.666
2isc 223Purine nucleoside phosphorylase, putative / 0.661
4e5f 0N7Polymerase acidic protein / 0.660