2.000 Å
X-ray
2010-11-03
Name: | Purine nucleoside phosphorylase |
---|---|
ID: | Q8I3X4_PLAF7 |
AC: | Q8I3X4 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 36329 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 86 % |
B | 14 % |
B-Factor: | 30.735 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 36 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.409 | 675.000 |
% Hydrophobic | % Polar |
---|---|
39.00 | 61.00 |
According to VolSite |
HET Code: | IM5 |
---|---|
Formula: | C12H18N5O3 |
Molecular weight: | 280.303 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 74.28 % |
Polar Surface area: | 128.17 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
-16.7917 | 9.76185 | -18.9069 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O5' | NE2 | HIS- 7 | 2.54 | 163.49 | H-Bond (Protein Donor) |
C3' | CG1 | VAL- 66 | 3.78 | 0 | Hydrophobic |
C4' | CG2 | VAL- 66 | 4.31 | 0 | Hydrophobic |
C5' | CG1 | VAL- 66 | 4.25 | 0 | Hydrophobic |
C5' | CE1 | TYR- 160 | 3.9 | 0 | Hydrophobic |
C3' | SD | MET- 183 | 3.68 | 0 | Hydrophobic |
C5' | SD | MET- 183 | 4.2 | 0 | Hydrophobic |
O3' | OE2 | GLU- 184 | 2.66 | 148.99 | H-Bond (Ligand Donor) |
N7 | OD1 | ASP- 206 | 2.83 | 151.32 | H-Bond (Ligand Donor) |
O6 | O | HOH- 281 | 2.76 | 165.1 | H-Bond (Protein Donor) |