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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3phc IM5 Purine nucleoside phosphorylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3phc IM5Purine nucleoside phosphorylase / 0.837
3of3 DIHPurine nucleoside phosphorylase DeoD-type 1 / 0.696
3occ DIHPurine nucleoside phosphorylase DeoD-type / 0.687
1nw4 IMHPurine nucleoside phosphorylase / 0.668
1k9s FM1Purine nucleoside phosphorylase DeoD-type / 0.658
1y6q TDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.653
4ts9 FMCPurine nucleoside phosphorylase DeoD-type / 0.653
1je1 GMPPurine nucleoside phosphorylase / 0.652