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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3obg SB2 Mitogen-activated protein kinase 14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3obg SB2Mitogen-activated protein kinase 14 / 0.937
4loo SB4Mitogen-activated protein kinase 14 / 0.774
1ywr LI9Mitogen-activated protein kinase 14 / 0.769
3gcp SB2Mitogen-activated protein kinase 14 / 0.763
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4ewq MWLMitogen-activated protein kinase 14 / 0.739
1yw2 PGJMitogen-activated protein kinase 14 / 0.737
4loq SB4Mitogen-activated protein kinase 14 / 0.733
2ghm LICMitogen-activated protein kinase 14 / 0.695
3w2s W2REpidermal growth factor receptor 2.7.10.1 0.695
2qd9 LGFMitogen-activated protein kinase 14 / 0.692
4f9w LM4Mitogen-activated protein kinase 14 / 0.689
3fmk FMKMitogen-activated protein kinase 14 / 0.687
1ouk 084Mitogen-activated protein kinase 14 / 0.676
3fmm XI2Mitogen-activated protein kinase 14 / 0.675
3flw FLWMitogen-activated protein kinase 14 / 0.671
1bl7 SB4Mitogen-activated protein kinase 14 / 0.660
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3fly FLYMitogen-activated protein kinase 14 / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ove 358Mitogen-activated protein kinase 14 / 0.656
3fi4 FI4Mitogen-activated protein kinase 14 / 0.655
3fln 3FNMitogen-activated protein kinase 14 / 0.655
1pme SB2Mitogen-activated protein kinase 1 2.7.11.24 0.652
3flz FLZMitogen-activated protein kinase 14 / 0.652
3que 3FFMitogen-activated protein kinase 14 / 0.651
4eh5 0OMMitogen-activated protein kinase 14 / 0.650