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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nos H4B Nitric oxide synthase, endothelial 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.906
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.824
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.816
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.814
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.812
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.805
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.798
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.796
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.795
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.794
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.793
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.793
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.793
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.792
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.791
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.790
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.785
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.783
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.782
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.782
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.780
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.779
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.779
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.778
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.777
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.776
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.775
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.774
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.774
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.772
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.772
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.772
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.770
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.766
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.765
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.762
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.761
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.761
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.761
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.761
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.761
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.760
3png H4BNitric oxide synthase, brain 1.14.13.39 0.758
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.758
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.758
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.758
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.757
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.756
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.756
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.754
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.754
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.752
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.750
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.750
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.739
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.728
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.721
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.719
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.717
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.717
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.717
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.716
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.715
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.715
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.715
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.704
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.686
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.685
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.684
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.683
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.682
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.680
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.680
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.660
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.655