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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nj8 NJ8 Enoyl-acyl carrier reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nj8 NJ8Enoyl-acyl carrier reductase / 1.040
2o2s TCLEnoyl-acyl carrier reductase / 0.807
1zxl JP1Enoyl-ACP reductase / 0.740
3nrc TCLEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.713
1d7o TCLEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.705
2foi JPAEnoyl-acyl carrier reductase / 0.705
4e5l DBHPolymerase acidic protein / 0.698
2b35 TCLEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
2op1 8PCEnoyl-ACP reductase / 0.686
3am3 TCLEnoyl-ACP reductase / 0.667
1zw1 TN5Enoyl-ACP reductase / 0.664
3p99 LNPLanosterol 14-alpha-demethylase / 0.663
4igf CHVEnoyl-acyl carrier reductase / 0.661
3lt1 FT2Enoyl-ACP reductase / 0.657
3am5 TCLEnoyl-ACP reductase / 0.653
3fnf JPMEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653