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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ngl NAP Bifunctional protein FolD

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ngl NAPBifunctional protein FolD / 1.056
1a4i NDPC-1-tetrahydrofolate synthase, cytoplasmic 1.5.1.5 0.833
1gq2 NAPNADP-dependent malic enzyme 1.1.1.40 0.734
4gcm NAPThioredoxin reductase 1.8.1.9 0.688
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.682
2cda NAPGlucose 1-dehydrogenase / 0.677
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.670
2q0k NAPThioredoxin reductase 1.8.1.9 0.666
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.662
4xb1 NDP319aa long hypothetical homoserine dehydrogenase / 0.660
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.657
3p2o NADBifunctional protein FolD / 0.653
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.652