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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ncg BK1 Calmodulin-domain protein kinase 1, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ncg BK1Calmodulin-domain protein kinase 1, putative / 1.073
3mwu BK3Calmodulin-domain protein kinase 1, putative / 0.911
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4qmx H8HSerine/threonine-protein kinase 24 2.7.11.1 0.671
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.666
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.665
3vs1 VSATyrosine-protein kinase HCK 2.7.10.2 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4k11 0J9Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.660
3akn 11DFatty acid-binding protein, intestinal / 0.658
4lgh 0JNProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.655
2ivv PP1Proto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.654
2iid FADL-amino-acid oxidase 1.4.3.2 0.652
2yi5 YI5Heat shock protein HSP 90-alpha / 0.651