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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n71 SFG Histone-lysine N-methyltransferase Smyd1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n71 SFGHistone-lysine N-methyltransferase Smyd1 / 1.040
3pdn SFGHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.822
5hq8 SAHHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.801
4o6f SAHN-lysine methyltransferase SMYD2 / 0.797
3ru0 SFGHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.795
3qwp SAMHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.794
5ex0 SAHHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.792
3rib SAHN-lysine methyltransferase SMYD2 / 0.788
4j83 SAMHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.778
3m53 SAHHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.764
3oxf SAHHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.748
3tg4 SAMN-lysine methyltransferase SMYD2 / 0.743
3cbp SFGHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.742
1n6c SAMHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.737
1ozv SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.734
5czy SAMEukaryotic huntingtin interacting protein B / 0.723
2h21 SAMRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.715
1mlv SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.712
2h2j SFGRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.699
3vv0 KH3Histone-lysine N-methyltransferase SETD7 2.1.1.43 0.693
1p0y SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.691
3fpd SAHHistone-lysine N-methyltransferase EHMT1 / 0.691
2r3a SAMHistone-lysine N-methyltransferase SUV39H2 2.1.1.43 0.690
3kmt SAHHistone H3K27 methylase / 0.681
2h23 SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.678
2o8j SAHHistone-lysine N-methyltransferase EHMT2 / 0.676
3swc SAHHistone-lysine N-methyltransferase EHMT1 / 0.676
4h12 SAHHistone-lysine N-methyltransferase SETD2 2.1.1.43 0.676
5jhn SAMHistone-lysine N-methyltransferase EHMT2 / 0.676
5jin SAMHistone-lysine N-methyltransferase EHMT2 / 0.674
2igq SAHHistone-lysine N-methyltransferase EHMT1 / 0.672
5jj0 SAMHistone-lysine N-methyltransferase EHMT2 / 0.669
3hna SAHHistone-lysine N-methyltransferase EHMT1 / 0.668
4o30 SAHProbable Histone-lysine N-methyltransferase ATXR5 2.1.1.43 0.668
2rfi SAHHistone-lysine N-methyltransferase EHMT1 / 0.667
3vuz K15Histone-lysine N-methyltransferase SETD7 2.1.1.43 0.666
4qen SAHHistone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 2.1.1.43 0.660
3mo0 SAHHistone-lysine N-methyltransferase EHMT1 / 0.659