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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mzb BHR Nickel-binding periplasmic protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mzb BHRNickel-binding periplasmic protein / 1.143
3mz9 BHNNickel-binding periplasmic protein / 1.053
3mw0 BHRNickel-binding periplasmic protein / 1.023
3mvw BHZNickel-binding periplasmic protein / 0.910
3mvz BHNNickel-binding periplasmic protein / 0.818
3mvy BHZNickel-binding periplasmic protein / 0.811
4nt0 3DUOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.669
2e82 IM3D-amino-acid oxidase 1.4.3.3 0.666
2iyp A2P6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.664
1khz ADVADP-ribose pyrophosphatase 3.6.1.13 0.662
3rye UNRFarnesyl pyrophosphate synthase 2.5.1.10 0.661
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.660
2ahc VNLChorismate pyruvate-lyase / 0.655
4fag GTQGentisate 1,2-dioxygenase / 0.655
3o5t ADPNitrogen regulatory protein P-II 1 / 0.653