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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mz9 BHN Nickel-binding periplasmic protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mz9 BHNNickel-binding periplasmic protein / 1.163
3mzb BHRNickel-binding periplasmic protein / 1.053
3mvy BHZNickel-binding periplasmic protein / 0.835
3mvz BHNNickel-binding periplasmic protein / 0.754
3mvw BHZNickel-binding periplasmic protein / 0.743
3mw0 BHRNickel-binding periplasmic protein / 0.735
1qd1 FONFormimidoyltransferase-cyclodeaminase 2.1.2.5 0.677
3q6j KPC2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.673
2e82 IM3D-amino-acid oxidase 1.4.3.3 0.670
4iwn GEKCarboxy-S-adenosyl-L-methionine synthase / 0.664
2cvv ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.663
2cvx DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.663
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.662
3o5t ADPNitrogen regulatory protein P-II 1 / 0.653
4nt0 3DUOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.652
4kyh ZSTLactoylglutathione lyase 4.4.1.5 0.651