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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3myt EQU Steroid Delta-isomerase 5.3.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3myt EQUSteroid Delta-isomerase 5.3.3.1 1.041
3ov4 EQUSteroid Delta-isomerase 5.3.3.1 0.896
3m8c EQUSteroid Delta-isomerase 5.3.3.1 0.702
1lhu ESTSex hormone-binding globulin / 0.693
3s79 ASDAromatase 1.14.14.14 0.689
4c49 HCYCorticosteroid-binding globulin / 0.672
2piq DHTAndrogen receptor / 0.671
2piw DHTAndrogen receptor / 0.665
3fzw EQUSteroid Delta-isomerase 5.3.3.1 0.664
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.662
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
2b1z 17MEstrogen receptor / 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5l DBHPolymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.657
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.654
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.653
3bur TES3-oxo-5-beta-steroid 4-dehydrogenase / 0.651