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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3myq E27 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3myq E27Carbonic anhydrase 2 4.2.1.1 0.971
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.850
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.840
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.826
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.816
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.815
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.804
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.771
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.769
3sax E50Carbonic anhydrase 2 4.2.1.1 0.760
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.737
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.729
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.720
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.720
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.717
3bet CTFCarbonic anhydrase 2 4.2.1.1 0.712
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.711
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.705
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.704
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.699
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.698
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.697
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.694
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.694
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.690
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.689
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.689
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.688
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.687
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.686
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.685
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.685
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.685
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.684
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.684
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.684
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.682
3mho J43Carbonic anhydrase 2 4.2.1.1 0.678
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.675
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.673
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.673
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.671
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.670
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.670
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.669
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.668
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.667
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.667
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.666
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.664
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.663
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.663
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.660
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.660
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.658
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.657
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.656
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.655
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.654
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.654
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.653
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.651