Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3meg T27 Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3meg T27Gag-Pol polyprotein 2.7.7.49 0.995
4ifv T27Gag-Pol polyprotein 2.7.7.49 0.830
3mee T27Gag-Pol polyprotein 2.7.7.49 0.826
5cyq T27Gag-Pol polyprotein 2.7.7.49 0.808
3qlh T27Gag-Pol polyprotein 2.7.7.49 0.790
4ig3 T27Gag-Pol polyprotein 2.7.7.49 0.764
4g1q T27Gag-Pol polyprotein 2.7.7.49 0.762
4kfb T27Gag-Pol polyprotein 2.7.7.49 0.755
1s6q TPBGag-Pol polyprotein 2.7.7.49 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3mec 65BGag-Pol polyprotein 2.7.7.49 0.739
2zd1 T27Gag-Pol polyprotein 2.7.7.49 0.737
2ze2 T27Gag-Pol polyprotein 2.7.7.49 0.734
4id5 T27Gag-Pol polyprotein 2.7.7.49 0.731
3m8p 65BGag-Pol polyprotein 2.7.7.49 0.722
4i2p G73Gag-Pol polyprotein 2.7.7.49 0.685
1s9e ADBGag-Pol polyprotein 2.7.7.49 0.670
4ko0 JLJGag-Pol polyprotein 2.7.7.49 0.662
4e5f 0N7Polymerase acidic protein / 0.660
1tkx GWBGag-Pol polyprotein 2.7.7.49 0.659
4i2q 1BTGag-Pol polyprotein 2.7.7.49 0.657
1tkt H12Gag-Pol polyprotein 2.7.7.49 0.655