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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3med 65B Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3med 65BGag-Pol polyprotein 2.7.7.49 1.107
3mec 65BGag-Pol polyprotein 2.7.7.49 0.969
2zd1 T27Gag-Pol polyprotein 2.7.7.49 0.822
3bgr T27Gag-Pol polyprotein 2.7.7.49 0.812
5cyq T27Gag-Pol polyprotein 2.7.7.49 0.790
4g1q T27Gag-Pol polyprotein 2.7.7.49 0.782
4ifv T27Gag-Pol polyprotein 2.7.7.49 0.782
4ig3 T27Gag-Pol polyprotein 2.7.7.49 0.782
4id5 T27Gag-Pol polyprotein 2.7.7.49 0.778
4kfb T27Gag-Pol polyprotein 2.7.7.49 0.776
3m8p 65BGag-Pol polyprotein 2.7.7.49 0.758
3qlh T27Gag-Pol polyprotein 2.7.7.49 0.742
2vg7 NNIGag-Pol polyprotein 2.7.7.49 0.664
4e5f 0N7Polymerase acidic protein / 0.660
2jko BIJFocal adhesion kinase 1 2.7.10.2 0.657
1eet BFUGag-Pol polyprotein 2.7.7.49 0.656
1pxm CK5Cyclin-dependent kinase 2 2.7.11.22 0.652