Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
3m6q | BB2 | Peptide deformylase 1B, chloroplastic/mitochondrial | 3.5.1.88 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
3m6q | BB2 | Peptide deformylase 1B, chloroplastic/mitochondrial | 3.5.1.88 | 1.102 | |
3m6r | BB2 | Peptide deformylase 1B, chloroplastic/mitochondrial | 3.5.1.88 | 0.886 | |
3uwb | BB2 | RIIA-RIIB membrane-associated protein | / | 0.855 | |
3pn4 | BB2 | Peptide deformylase 1B, chloroplastic/mitochondrial | 3.5.1.88 | 0.839 | |
3m6p | BB2 | Peptide deformylase 1B, chloroplastic/mitochondrial | 3.5.1.88 | 0.819 | |
3u04 | BB2 | Peptide deformylase | / | 0.814 | |
1lru | BB2 | Peptide deformylase | 3.5.1.88 | 0.790 | |
4je7 | BB2 | Peptide deformylase 1A, chloroplastic/mitochondrial | 3.5.1.88 | 0.777 | |
3g5k | BB2 | Peptide deformylase, mitochondrial | 3.5.1.88 | 0.727 | |
1lqy | BB2 | Peptide deformylase 2 | 3.5.1.88 | 0.723 | |
1g2a | BB2 | Peptide deformylase | 3.5.1.88 | 0.720 | |
1ix1 | BB2 | Peptide deformylase | / | 0.712 | |
1lry | BB2 | Peptide deformylase | / | 0.710 | |
2okl | BB2 | Peptide deformylase 2 | / | 0.705 | |
1ws1 | BB2 | Peptide deformylase 1 | / | 0.701 | |
4e9b | BB2 | Peptide deformylase | / | 0.696 | |
2os3 | BB2 | Peptide deformylase | / | 0.677 | |
2os1 | BB2 | Peptide deformylase | / | 0.671 | |
3l0t | INN | Disintegrin and metalloproteinase domain-containing protein 17 | 3.4.24.86 | 0.659 |