1.700 Å
X-ray
2011-12-01
Name: | RIIA-RIIB membrane-associated protein |
---|---|
ID: | E3SLL2_9CAUD |
AC: | E3SLL2 |
Organism: | Synechococcus phage S-SSM7 |
Reign: | Viruses |
TaxID: | 445686 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 15.663 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.506 | 256.500 |
% Hydrophobic | % Polar |
---|---|
48.68 | 51.32 |
According to VolSite |
HET Code: | BB2 |
---|---|
Formula: | C19H35N3O5 |
Molecular weight: | 385.498 g/mol |
DrugBank ID: | DB04310 |
Buried Surface Area: | 60.79 % |
Polar Surface area: | 118.97 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 4 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
9.85148 | 31.1223 | 14.7725 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O13 | N | ILE- 43 | 2.82 | 153.11 | H-Bond (Protein Donor) |
C8 | CG1 | ILE- 43 | 3.9 | 0 | Hydrophobic |
C24 | CD1 | ILE- 43 | 4.09 | 0 | Hydrophobic |
N1 | O | GLY- 44 | 3.23 | 131.68 | H-Bond (Ligand Donor) |
O4 | NE2 | GLN- 49 | 3.24 | 148.31 | H-Bond (Protein Donor) |
C11 | CE2 | PHE- 88 | 3.95 | 0 | Hydrophobic |
C25 | CE2 | PHE- 88 | 3.88 | 0 | Hydrophobic |
C26 | CE2 | PHE- 88 | 4.17 | 0 | Hydrophobic |
O27 | O | ASP- 89 | 2.55 | 165.23 | H-Bond (Ligand Donor) |
C10 | CG | GLU- 90 | 3.88 | 0 | Hydrophobic |
N14 | O | GLY- 91 | 3.08 | 172.48 | H-Bond (Ligand Donor) |
O20 | N | GLY- 91 | 3.01 | 156.12 | H-Bond (Protein Donor) |
C5 | CG | LEU- 93 | 3.93 | 0 | Hydrophobic |
C17 | CD2 | LEU- 93 | 4.06 | 0 | Hydrophobic |
O4 | N | LEU- 93 | 2.86 | 155.65 | H-Bond (Protein Donor) |
C11 | CG | ARG- 130 | 3.79 | 0 | Hydrophobic |
C8 | CG2 | VAL- 131 | 4.39 | 0 | Hydrophobic |
C9 | CB | HIS- 134 | 3.9 | 0 | Hydrophobic |
N1 | OE2 | GLU- 135 | 2.68 | 123.88 | H-Bond (Ligand Donor) |
O4 | ZN | ZN- 200 | 2.21 | 0 | Metal Acceptor |
O2 | ZN | ZN- 200 | 2.14 | 0 | Metal Acceptor |