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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lnm NAP Voltage-gated potassium channel subunit beta-2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 1.348
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 1.212
4jta NAPVoltage-gated potassium channel subunit beta-2 / 1.198
3lut NAPVoltage-gated potassium channel subunit beta-2 / 1.047
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 1.024
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 1.011
1lqa NDPProtein tas / 0.882
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 0.859
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.811
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.791
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.773
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 0.759
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.758
1pz1 NAPGeneral stress protein 69 / 0.741
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.739
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.729
3wg6 NDPNADPH-dependent conjugated polyketone reductase C1 / 0.727
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.726
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.702
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.684
1a80 NDP2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.678
1ah4 NAPAldose reductase 1.1.1.21 0.676
4h8n NDPNADPH-dependent conjugated polyketone reductase C2 / 0.673
2p5n NDPAldo-keto reductase family 1 member C21 1.1.1 0.671
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.664
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.663
1vp5 NAPOxidoreductase, aldo/keto reductase family / 0.662
1og6 NAPOxidoreductase YdhF 1 0.660
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 0.660
3q67 NAPAldose reductase 1.1.1.21 0.659
3dop NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.657
4ijr NDPD-arabinose dehydrogenase [NAD(P)+] heavy chain 1.1.1.117 0.652
1z8a NAPAldose reductase 1.1.1.21 0.650