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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lin E13 Protease

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lin E13Protease / 1.350
3liv E16Protease / 1.112
3lix E17Protease / 1.096
3liq E14Protease / 1.075
3lit E15Protease / 1.036
3slz 3TLPutative gag-pro-pol polyprotein / 0.795
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.788
3oxx DR7Gag-Pol polyprotein 3.4.23.16 0.775
1hpx KNIGag-Pol polyprotein / 0.754
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.751
3el1 DR7Gag-Pol polyprotein 3.4.23.16 0.748
3fx5 KNIGag-Pol polyprotein 3.4.23.16 0.738
3em4 DR7Gag-Pol polyprotein 3.4.23.16 0.732
4k4p 3TLGag-Pol polyprotein / 0.732
2fxd DR7Pol polyprotein / 0.730
2pk5 075Protease / 0.730
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.723
3a2o KNJGag-Pol polyprotein 3.4.23.16 0.722
1hih C20Gag-Pol polyprotein / 0.720
3ekw DR7Gag-Pol polyprotein 3.4.23.16 0.720
2cen 4AHProtease / 0.713
3tlh 3TLGag-Pol polyprotein 3.4.23.16 0.711
1b11 3TLPol polyprotein / 0.710
1hvi A77Protease / 0.710
2az8 3TLGag-Pol polyprotein 3.4.23.16 0.710
3el9 DR7Gag-Pol polyprotein 3.4.23.16 0.710
2p3b 3TLV-1 PROTEASE protein / 0.708
2p3b 3TLV-1 protease / 0.708
2p3c 3TLProtease / 0.707
2azb 3TLGag-Pol polyprotein 3.4.23.16 0.705
3kfr 3TLGag-Pol polyprotein / 0.703
2pk6 O33V-1 protease / 0.702
3s85 LK0Gag-Pol polyprotein / 0.701
1hos PHPGag-Pol polyprotein / 0.697
2p3a 3TLPol protein / 0.696
3gga GGWGag-Pol polyprotein / 0.693
2aqu DR7Gag-Pol polyprotein 3.4.23.16 0.692
3dcr KVSProtease / 0.692
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.691
1msm JE2Gag-Pol polyprotein 3.4.23.16 0.691
1msn JE2Gag-Pol polyprotein 3.4.23.16 0.691
1vij BAYGag-Pol polyprotein / 0.691
1hii C20Gag-Pol polyprotein / 0.689
1hvs A77Gag-Pol polyprotein / 0.688
3kdc JZPGag-Pol polyprotein 3.4.23.16 0.687
3kfp 3TLGag-Pol polyprotein / 0.684
3kfn 3TLGag-Pol polyprotein / 0.683
3ndx RITGag-Pol polyprotein 3.4.23.16 0.679
1hvj A78Gag-Pol polyprotein / 0.678
3ndw RITGag-Pol polyprotein 3.4.23.16 0.678
1fff 0Q4Gag-Pol polyprotein 3.4.23.16 0.677
1hxb ROCGag-Pol polyprotein 3.4.23.16 0.677
1zsr 0ZTGag-Pol polyprotein 3.4.23.16 0.677
1fg6 2NCGag-Pol polyprotein 3.4.23.16 0.675
1rl8 RITGag-Pol polyprotein 3.4.23.16 0.674
2rkg AB1Pol protein / 0.674
3kf0 3TLGag-Pol polyprotein / 0.674
3tof 076Gag-Pol polyprotein 2.7.7.49 0.672
2q5k AB1Protease / 0.669
1ffi 2NCGag-Pol polyprotein 3.4.23.16 0.667
1hxw RITGag-Pol polyprotein / 0.666
1zsf 0ZSGag-Pol polyprotein 3.4.23.16 0.665
3ekx 1UNGag-Pol polyprotein 3.4.23.16 0.664
2b60 RITPol polyprotein / 0.663
2wl0 5AHGag-Pol polyprotein / 0.663
2bpy 3INGag-Pol polyprotein 3.4.23.16 0.661
3ndu ROCGag-Pol polyprotein 3.4.23.16 0.661
4qgi ROCGag-Pol polyprotein 3.4.23.16 0.660
2az9 3TLGag-Pol polyprotein 3.4.23.16 0.659
1d4l PI9Gag-Pol polyprotein 3.4.23.16 0.654
3kdb 006Gag-Pol polyprotein 3.4.23.16 0.654
1odw 0E8Gag-Pol polyprotein 3.4.23.16 0.653
1xe5 5FEPlasmepsin-2 3.4.23.39 0.653
3ggx GGXGag-Pol polyprotein / 0.653
2fmb LP1Reverse transcriptase / 0.652
2i4u DJRProtease / 0.651