2.000 Å
X-ray
1998-12-03
Name: | Gag-Pol polyprotein |
---|---|
ID: | POL_HV1B1 |
AC: | P03366 |
Organism: | Human immunodeficiency virus type 1 group M subtype B |
Reign: | Viruses |
TaxID: | 11678 |
EC Number: | 3.4.23.16 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 28.509 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.414 | 378.000 |
% Hydrophobic | % Polar |
---|---|
42.86 | 57.14 |
According to VolSite |
HET Code: | 3TL |
---|---|
Formula: | C50H64N6O10 |
Molecular weight: | 909.077 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 36.79 % |
Polar Surface area: | 233.51 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 8 |
Rings: | 4 |
Aromatic rings: | 4 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 4 |
Rotatable Bonds: | 25 |
X | Y | Z |
---|---|---|
-11.8404 | 12.9123 | 32.6888 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1 | OD1 | ASP- 25 | 3.25 | 151.58 | H-Bond (Ligand Donor) |
N1 | O | GLY- 27 | 3.2 | 165.98 | H-Bond (Ligand Donor) |
CG1 | CB | ALA- 28 | 3.84 | 0 | Hydrophobic |
O4 | N | ASP- 29 | 3.19 | 169.99 | H-Bond (Protein Donor) |
CG2 | CG1 | VAL- 32 | 4.38 | 0 | Hydrophobic |
CG1 | CG1 | VAL- 32 | 4.32 | 0 | Hydrophobic |
CG2 | CD1 | ILE- 47 | 4.07 | 0 | Hydrophobic |
N2 | O | GLY- 48 | 2.85 | 162.41 | H-Bond (Ligand Donor) |
C8 | CG2 | ILE- 50 | 3.8 | 0 | Hydrophobic |
CG1 | CD1 | ILE- 84 | 3.75 | 0 | Hydrophobic |