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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l0n S5P Uridine 5'-monophosphate synthase 4.1.1.23

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3l0n S5PUridine 5'-monophosphate synthase 4.1.1.23 1.234
3ewy U5PUridine 5'-monophosphate synthase 4.1.1.23 1.050
4hib 16BUridine 5'-monophosphate synthase 4.1.1.23 0.857
4nt0 3DUOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.712
2czf XMPOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.693
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.663
1kqo DNDNicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1 0.657
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.657
3a1n NADNDP-sugar epimerase / 0.654
3mje NDPAmphB / 0.651
2xje U5PCytosolic purine 5'-nucleotidase 3.1.3.5 0.650
3ka7 FADPutative oxidoreductase / 0.650