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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kpb SAM Uncharacterized protein MJ0100

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kpb SAMUncharacterized protein MJ0100 / 0.938
3kh5 ADPUncharacterized protein MJ1225 / 0.746
3lfz ADPUncharacterized protein MJ1225 / 0.730
2y8l ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.669
3vas ADNPutative adenosine kinase / 0.669
3reo SAH(Iso)eugenol O-methyltransferase 2.1.1.146 0.668
3w8r CTNUridine kinase / 0.665
1kph SAHCyclopropane mycolic acid synthase 1 2.1.1.79 0.664
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.664
3coy 53HPantothenate synthetase 6.3.2.1 0.655
3coz 54HPantothenate synthetase 6.3.2.1 0.655
3fwr ADPTranscriptional repressor CcpN / 0.655
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.655
5icf SAH(S)-norcoclaurine 6-O-methyltransferase / 0.652
3p9k SAHCaffeic acid O-methyltransferase / 0.651
1xwf ADNAdenosylhomocysteinase 3.3.1.1 0.650