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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k8o 229 Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3k8o 229Purine nucleoside phosphorylase 2.4.2.1 0.930
2p4s DIHAGAP005945-PA / 0.753
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.734
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.726
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.717
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.710
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.699
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.699
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.682
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.681
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.671
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.669
2q7o IMHPurine nucleoside phosphorylase 2.4.2.1 0.665