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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jyn NDP Quinone oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jyn NDPQuinone oxidoreductase / 1.466
1qor NDPQuinone oxidoreductase 1 / 1.158
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 1.120
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.931
2c0c NAPProstaglandin reductase 3 1 0.858
2y05 NAPProstaglandin reductase 1 / 0.775
5doz NDPJamJ / 0.774
1o8c NDPProbable acrylyl-CoA reductase AcuI 1.3.1.84 0.739
5dp2 NAPCurF / 0.735
2oby NAPQuinone oxidoreductase PIG3 1 0.731
1yqd NAPSinapyl alcohol dehydrogenase / 0.726
1yqx NAPSinapyl alcohol dehydrogenase / 0.724
2zb3 NDPProstaglandin reductase 2 1.3.1.48 0.721
2j8z NAPQuinone oxidoreductase PIG3 1 0.717
2vna NAPProstaglandin reductase 2 1.3.1.48 0.704
1iyz NDPProbable quinone oxidoreductase / 0.703
4ejm NAPPutative zinc-binding dehydrogenase / 0.686
3slk NDPPolyketide synthase extender module 2 / 0.684
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.682
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.674
3mje NDPAmphB / 0.673
3two NDPMannitol dehydrogenase / 0.673
3tqh NDPQuinone oxidoreductase / 0.671
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.671
4y1b NAPAntE / 0.669
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.663
2yut NAPPutative short-chain oxidoreductase / 0.663
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.663
1piw NAPNADP-dependent alcohol dehydrogenase 6 1.1.1.2 0.661
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.661
4hfm NAP2-alkenal reductase (NADP(+)-dependent) / 0.661
3abi NADUncharacterized protein / 0.659
3oet NADErythronate-4-phosphate dehydrogenase / 0.657
3wg6 NDPNADPH-dependent conjugated polyketone reductase C1 / 0.657
4oaq NDPR-specific carbonyl reductase / 0.657
5kj1 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.654
1kev NDPNADP-dependent isopropanol dehydrogenase 1.1.1.80 0.653
2c29 NAPDihydroflavonol 4-reductase / 0.653
2o4c NADErythronate-4-phosphate dehydrogenase / 0.653
3aw9 NADNAD-dependent epimerase/dehydratase / 0.651
3nx4 NAPPutative oxidoreductase / 0.650