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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iw7 IPK Mitogen-activated protein kinase 14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3iw7 IPKMitogen-activated protein kinase 14 / 1.038
3hp2 P36Mitogen-activated protein kinase 14 / 0.732
3fko FKOMitogen-activated protein kinase 14 / 0.728
3zsh 469Mitogen-activated protein kinase 14 / 0.725
3hll I45Mitogen-activated protein kinase 14 / 0.716
2qd9 LGFMitogen-activated protein kinase 14 / 0.713
1zyj BI5Mitogen-activated protein kinase 14 / 0.705
1m7q DQOMitogen-activated protein kinase 14 / 0.697
3gc7 B45Mitogen-activated protein kinase 14 / 0.697
3roc 29AMitogen-activated protein kinase 14 / 0.696
3qud N3FMitogen-activated protein kinase 14 / 0.691
3iw6 PP0Mitogen-activated protein kinase 14 / 0.681
3c5u P41Mitogen-activated protein kinase 14 / 0.678
2b1p AIZMitogen-activated protein kinase 10 2.7.11.24 0.663
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
1yw2 PGJMitogen-activated protein kinase 14 / 0.659
3kf7 L9GMitogen-activated protein kinase 14 / 0.659
2yix YIXMitogen-activated protein kinase 14 / 0.657
3que 3FFMitogen-activated protein kinase 14 / 0.650