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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iw4 LW4 Protein kinase C alpha type 2.7.11.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3iw4 LW4Protein kinase C alpha type 2.7.11.13 1.039
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3pjc PJCTyrosine-protein kinase JAK3 2.7.10.2 0.706
2vd5 BI8Myotonin-protein kinase 2.7.11.1 0.701
1q4l 679Glycogen synthase kinase-3 beta 2.7.11.26 0.676
1uvr BI83-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.676
3otu BI43-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.676
1uu8 BI13-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.672
3orz BI43-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.664
1zrz BI1Protein kinase C iota type 2.7.11.13 0.660
4e5f 0N7Polymerase acidic protein / 0.660
2jed LG8Protein kinase C theta type 2.7.11.13 0.657
1uu7 BI23-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.651