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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3i99 FAD UDP-N-acetylenolpyruvoylglucosamine reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.456
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.201
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.195
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 1.080
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.999
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.978
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.951
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.918
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.891
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.869
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.835
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.810
4ysw FADXanthine dehydrogenase/oxidase / 0.806
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.803
1wyg FADXanthine dehydrogenase/oxidase / 0.786
3pm9 FADPutative oxidoreductase / 0.772
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.760
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.754
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.718
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.695
3hjk FADVivid PAS protein VVD / 0.692
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.680
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.679
4r3a RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.674
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.668
3f90 FMNFlavodoxin / 0.666
4dna FADProbable glutathione reductase / 0.662
3n3b FMNProtein NrdI / 0.658
4jxx ATPGlutamine--tRNA ligase 6.1.1.18 0.654
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.654
3gwd FADCyclohexanone monooxygenase / 0.650