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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3i6q NDP Putative leucoanthocyanidin reductase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3i6q NDPPutative leucoanthocyanidin reductase 1 / 1.029
3i6i NDPPutative leucoanthocyanidin reductase 1 / 0.882
3q2k NAIProbable oxidoreductase / 0.700
2qw8 NAPEugenol synthase 1 1.1.1.318 0.684
2r6j NDPEugenol synthase 1 1.1.1.318 0.684
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.678
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.674
5bsg NAPPyrroline-5-carboxylate reductase / 0.666
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.662
3c1o NAPEugenol synthase / 0.660
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.659
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.659
4pxz CLRP2Y purinoceptor 12 / 0.659
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.658
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.656
2qx7 NAPEugenol synthase 1 1.1.1.318 0.655
4xgi NADGlutamate dehydrogenase / 0.654
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.653
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.652
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 0.651
1cf2 NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.650
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 0.650
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.650
5emh NAPIridoid synthase 1.3.1.99 0.650