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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hr4 FMN Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 1.188
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.928
2v5u FMNFlavodoxin / 0.856
4oxx FMNCindoxin / 0.829
2bf4 FMNNADPH--cytochrome P450 reductase / 0.816
4yao FMNNADPH--cytochrome P450 reductase / 0.804
1czn FMNFlavodoxin / 0.789
2fx2 FMNFlavodoxin / 0.789
1j8q FMNFlavodoxin / 0.786
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.785
1xyv FMNFlavodoxin / 0.783
1azl FMNFlavodoxin / 0.769
1ofv FMNFlavodoxin / 0.767
1wsb FMNFlavodoxin / 0.765
2bn4 FMNNADPH--cytochrome P450 reductase / 0.765
1akw FMNFlavodoxin / 0.762
1amo FMNNADPH--cytochrome P450 reductase / 0.762
1yob FMNFlavodoxin 2 / 0.754
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.753
5tgz FMNCannabinoid receptor 1 / 0.748
1c7f FMNFlavodoxin / 0.747
3esz FMNFlavodoxin / 0.747
2v5v FMNFlavodoxin / 0.741
1akr FMNFlavodoxin / 0.739
1ja0 FMNNADPH--cytochrome P450 reductase / 0.738
3qfr FMNNADPH--cytochrome P450 reductase / 0.738
3esy FMNFlavodoxin / 0.737
3qe2 FMNNADPH--cytochrome P450 reductase / 0.728
1ahn FMNFlavodoxin 1 / 0.725
1j9g FMNFlavodoxin / 0.722
4fx2 FMNFlavodoxin / 0.721
1aku FMNFlavodoxin / 0.718
4y7c FMNNADPH--cytochrome P450 reductase / 0.717
3ojx FMNNADPH--cytochrome P450 reductase / 0.715
2fcr FMNFlavodoxin / 0.712
1xyy FMNFlavodoxin / 0.709
1ja1 FMNNADPH--cytochrome P450 reductase / 0.708
1fx1 FMNFlavodoxin / 0.706
3n39 FMNProtein NrdI / 0.701
1fue FMNFlavodoxin / 0.700
1j9z FMNNADPH--cytochrome P450 reductase / 0.695
4bmp FMNProtein NrdI / 0.694
3f90 FMNFlavodoxin / 0.691
3ojw FMNNADPH--cytochrome P450 reductase / 0.691
3n3a FMNProtein NrdI / 0.690
3f6s FMNFlavodoxin / 0.682
2ohi FMNType A flavoprotein FprA 1 0.680
3kap FMNFlavodoxin / 0.672
2ohj FMNType A flavoprotein FprA 1 0.663
1bu5 RBFFlavodoxin / 0.662
3n3b FMNProtein NrdI / 0.662
1ych FMNNitric oxide reductase 1 0.661
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.659
1ycg FMNNitric oxide reductase 1 0.658
5xr8 FMNCannabinoid receptor 1 / 0.658
3kaq FMNFlavodoxin / 0.657
4bmo FMNProtein NrdI / 0.655
3f6r FMNFlavodoxin / 0.653