sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3g5m | FAD | Ribosyldihydronicotinamide dehydrogenase [quinone] |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3g5m | FAD | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 1.344 | |
| 4qoe | FAD | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 1.301 | |
| 4zvl | FAD | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 1.265 | |
| 4zvn | FAD | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 1.234 | |
| 2qmy | FAD | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 1.197 | |
| 4qof | FMN | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 1.129 | |
| 1qr2 | FAD | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 1.101 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 1.020 | |
| 5a4k | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 1.008 | |
| 5eai | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 1.003 | |
| 1h66 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.993 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.989 | |
| 1gg5 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.976 | |
| 1h69 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.974 | |
| 1qbg | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.964 | |
| 1dxo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.949 | |
| 1dxq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.939 | |
| 1kbo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.936 | |
| 3klb | FMN | Uncharacterized protein | / | 0.810 | |
| 4gi5 | FAD | Putative NAD(P)H dehydrogenase (Quinone) | / | 0.797 | |
| 2b3d | FAD | Modulator of drug activity B | / | 0.793 | |
| 4j8p | FMN | Flavodoxin | / | 0.793 | |
| 4m0c | FMN | FMN-dependent NADH-azoreductase 1 | / | 0.778 | |
| 2hpv | FMN | FMN-dependent NADH-azoreductase | 1.7 | 0.776 | |
| 3lcm | FAD | Putative oxidoreductase | / | 0.763 | |
| 3rpe | FAD | Putative modulator of drug activity | / | 0.756 | |
| 4n9q | FMN | FMN-dependent NADH-azoreductase 1 | / | 0.745 | |
| 4n65 | FMN | FMN-dependent NADH-azoreductase 1 | / | 0.733 | |
| 2q9u | FMN | A-type flavoprotein | / | 0.732 | |
| 3w77 | FMN | FMN-dependent NADH-azoreductase | / | 0.731 | |
| 1vhn | FMN | tRNA-dihydrouridine synthase | / | 0.723 | |
| 2ohj | FMN | Type A flavoprotein FprA | 1 | 0.721 | |
| 4hs4 | FMN | Chromate reductase | / | 0.705 | |
| 1z41 | FMN | NADPH dehydrogenase | / | 0.699 | |
| 2bf4 | FMN | NADPH--cytochrome P450 reductase | / | 0.695 | |
| 1icq | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.694 | |
| 2v5u | FMN | Flavodoxin | / | 0.694 | |
| 2z9d | FMN | FMN-dependent NADH-azoreductase | / | 0.694 | |
| 1azl | FMN | Flavodoxin | / | 0.692 | |
| 4tmb | FMN | Old yellow enzyme | / | 0.692 | |
| 1ofd | FMN | Ferredoxin-dependent glutamate synthase 2 | 1.4.7.1 | 0.689 | |
| 4r81 | FMN | Predicted NADH dehydrogenase | / | 0.687 | |
| 1zwl | FMN | NAD(P)H dehydrogenase (quinone) | 1.6.5.2 | 0.686 | |
| 1t5b | FMN | FMN-dependent NADH-azoreductase | / | 0.680 | |
| 1czn | FMN | Flavodoxin | / | 0.677 | |
| 3esz | FMN | Flavodoxin | / | 0.677 | |
| 3l67 | FMN | Xenobiotic reductase | / | 0.677 | |
| 4dy4 | FMN | NAD(P)H dehydrogenase (quinone) | / | 0.677 | |
| 3hgr | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.676 | |
| 2isl | FNR | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.674 | |
| 3f6s | FMN | Flavodoxin | / | 0.674 | |
| 3qfr | FMN | NADPH--cytochrome P450 reductase | / | 0.674 | |
| 1lm1 | FMN | Ferredoxin-dependent glutamate synthase 2 | 1.4.7.1 | 0.673 | |
| 4qly | FMN | Enone reductase CLA-ER | / | 0.672 | |
| 4utl | FNR | Xenobiotic reductase | / | 0.672 | |
| 2gou | FMN | NADH:flavin oxidoreductase Sye1 | / | 0.671 | |
| 4qai | FMN | NADPH dehydrogenase | / | 0.671 | |
| 1wsb | FMN | Flavodoxin | / | 0.670 | |
| 1gwj | FMN | Morphinone reductase | / | 0.668 | |
| 1llw | FMN | Ferredoxin-dependent glutamate synthase 2 | 1.4.7.1 | 0.668 | |
| 2z6i | FMN | 2-nitropropane dioxygenase | / | 0.668 | |
| 5f12 | FMN | NAD(P)H dehydrogenase (quinone) | / | 0.665 | |
| 1q45 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.664 | |
| 1j8q | FMN | Flavodoxin | / | 0.662 | |
| 1siq | FAD | Glutaryl-CoA dehydrogenase, mitochondrial | 1.3.8.6 | 0.660 | |
| 1bwl | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.659 | |
| 1gox | FMN | Peroxisomal (S)-2-hydroxy-acid oxidase | 1.1.3.15 | 0.659 | |
| 4bmo | FMN | Protein NrdI | / | 0.659 | |
| 4uth | FMN | Xenobiotic reductase | / | 0.659 | |
| 4utm | FNR | Xenobiotic reductase | / | 0.657 | |
| 1t9g | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.656 | |
| 1c7f | FMN | Flavodoxin | / | 0.652 | |
| 2ohi | FMN | Type A flavoprotein FprA | 1 | 0.652 | |
| 1n9n | FMN | Putative blue light receptor | / | 0.650 |