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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fzw EQU Steroid Delta-isomerase 5.3.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fzw EQUSteroid Delta-isomerase 5.3.3.1 1.006
1oh0 EQUSteroid Delta-isomerase 5.3.3.1 0.875
3ows EQUSteroid Delta-isomerase 5.3.3.1 0.834
3ipt EQUSteroid Delta-isomerase 5.3.3.1 0.802
1ogx EQUSteroid Delta-isomerase 5.3.3.1 0.759
3owy EQUSteroid Delta-isomerase 5.3.3.1 0.749
1e3r ANDSteroid Delta-isomerase 5.3.3.1 0.711
4j24 ESTEstrogen receptor beta / 0.680
4e5l DBHPolymerase acidic protein / 0.672
1i5r HYCEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.670
3myt EQUSteroid Delta-isomerase 5.3.3.1 0.664
1q13 TESProstaglandin-E(2) 9-reductase 1.1.1.189 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1lhv NOGSex hormone-binding globulin / 0.655
3owu EQUSteroid Delta-isomerase 5.3.3.1 0.654
2ab2 SNLMineralocorticoid receptor / 0.653
3gki CLRNiemann-Pick C1 protein / 0.653
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.652