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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fwr ADP Transcriptional repressor CcpN

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fwr ADPTranscriptional repressor CcpN / 1.022
3fws ANPTranscriptional repressor CcpN / 0.930
4eaj ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.715
2v92 ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.713
3t4n ADP5'-AMP-activated protein kinase subunit gamma / 0.693
2rc3 NADCBS domain / 0.690
2v9j ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.684
4eag ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.683
4azw SAMO-antigen chain terminator bifunctional methyltransferase/kinase WbdD / 0.674
2j9l ATPH(+)/Cl(-) exchange transporter 5 / 0.663
2ooy ATP5'-AMP-activated protein kinase subunit gamma / 0.663
4fry NADPutative signal-transduction protein with CBS domains / 0.661
1nve NADPentafunctional AROM polypeptide / 0.655
3kpb SAMUncharacterized protein MJ0100 / 0.655
2y8l ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.651
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.651