Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ffi 3OB Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ffi 3OBGag-Pol polyprotein 2.7.7.49 1.172
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2ynf WHUGag-Pol polyprotein 2.7.7.49 0.727
3dya PZLGag-Pol polyprotein 2.7.7.49 0.694
3t1a 5MAGag-Pol polyprotein 2.7.7.49 0.692
1rt2 TNKGag-Pol polyprotein 2.7.7.49 0.690
3tam M06Gag-Pol polyprotein 2.7.7.49 0.678
3drp R8EGag-Pol polyprotein 2.7.7.49 0.671
3t19 5MAGag-Pol polyprotein 2.7.7.49 0.667
1jla TNKGag-Pol polyprotein 2.7.7.49 0.665
4rw4 494Gag-Pol polyprotein 2.7.7.49 0.665
1rt1 MKCGag-Pol polyprotein 2.7.7.49 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4rw6 494Gag-Pol polyprotein 2.7.7.49 0.660
1c1b GCAGag-Pol polyprotein 2.7.7.49 0.658
3c6u M22Gag-Pol polyprotein 2.7.7.49 0.658
3di6 PDZGag-Pol polyprotein 2.7.7.49 0.654
3drr R8EGag-Pol polyprotein 2.7.7.49 0.654