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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fe1 ADP Heat shock 70 kDa protein 6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fe1 ADPHeat shock 70 kDa protein 6 / 0.923
1ngb ADPHeat shock cognate 71 kDa protein / 0.887
1ngc ADPHeat shock cognate 71 kDa protein / 0.867
2qwn ADPHeat shock cognate 71 kDa protein / 0.841
2qwl ADPHeat shock cognate 71 kDa protein / 0.840
3hsc ADPHeat shock cognate 71 kDa protein / 0.833
1ats ADPHeat shock cognate 71 kDa protein / 0.809
3ldo ANP78 kDa glucose-regulated protein / 0.801
1nge ATPHeat shock cognate 71 kDa protein / 0.800
1ngj ANPHeat shock cognate 71 kDa protein / 0.792
1ngi ANPHeat shock cognate 71 kDa protein / 0.785
1ngd ADPHeat shock cognate 71 kDa protein / 0.780
1ngh ATPHeat shock cognate 71 kDa protein / 0.763
5f1x ATP78 kDa glucose-regulated protein / 0.762
5f2r ACP78 kDa glucose-regulated protein / 0.762
2qwq ADPHeat shock cognate 71 kDa protein / 0.761
2qwr ANPHeat shock cognate 71 kDa protein / 0.759
4b9q ATPChaperone protein DnaK / 0.758
4h5t ADPHeat shock cognate 71 kDa protein / 0.754
3ldl ATP78 kDa glucose-regulated protein / 0.720
1s22 ATPActin, alpha skeletal muscle / 0.705
3d2e ATPHeat shock protein homolog SSE1 / 0.700
4b1v ATPActin, alpha skeletal muscle / 0.699
1atr ADPHeat shock cognate 71 kDa protein / 0.695
3a5m ATPMajor actin / 0.682
1c0f ATPMajor actin / 0.677
3ule ATPActin-related protein 2 / 0.674
4io8 3FDHeat shock 70 kDa protein 1B / 0.662
1nm1 ATPMajor actin / 0.659
1nlv ATPMajor actin / 0.656
4ci6 ATPActin / 0.656
1wua ATPActin, alpha skeletal muscle / 0.655